Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 KRT18P13-201ENST00000400056 1290 ntBASIC20.79■□□□□ 0.92
TTC28Q96AY4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.79■□□□□ 0.92
TTC28Q96AY4 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 DGCR10-201ENST00000609839 495 ntBASIC20.78■□□□□ 0.92
TTC28Q96AY4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TTC28Q96AY4 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 HOMER2P1-201ENST00000455653 964 ntBASIC20.78■□□□□ 0.92
TTC28Q96AY4 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.78■□□□□ 0.92
TTC28Q96AY4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 AC138932.3-201ENST00000567634 1902 ntBASIC20.77■□□□□ 0.92
TTC28Q96AY4 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TTC28Q96AY4 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TTC28Q96AY4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.77■□□□□ 0.91
TTC28Q96AY4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.77■□□□□ 0.91
TTC28Q96AY4 B3GAT3P1-201ENST00000471720 806 ntBASIC20.77■□□□□ 0.91
TTC28Q96AY4 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TTC28Q96AY4 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.91
TTC28Q96AY4 AC104692.2-201ENST00000603054 253 ntBASIC20.77■□□□□ 0.91
TTC28Q96AY4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TTC28Q96AY4 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TTC28Q96AY4 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TTC28Q96AY4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC20.76■□□□□ 0.91
TTC28Q96AY4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.76■□□□□ 0.91
TTC28Q96AY4 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TTC28Q96AY4 FAM220CP-201ENST00000395253 831 ntBASIC20.76■□□□□ 0.91
TTC28Q96AY4 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TTC28Q96AY4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.76■□□□□ 0.91
TTC28Q96AY4 AL136038.3-201ENST00000561909 1096 ntBASIC20.76■□□□□ 0.91
TTC28Q96AY4 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.75■□□□□ 0.91
TTC28Q96AY4 AC092053.2-201ENST00000640557 1818 ntBASIC20.75■□□□□ 0.91
TTC28Q96AY4 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 ATP5G2P1-201ENST00000433580 426 ntBASIC20.75■□□□□ 0.91
TTC28Q96AY4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.75■□□□□ 0.91
TTC28Q96AY4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TTC28Q96AY4 NPAP1P7-201ENST00000613027 823 ntBASIC20.75■□□□□ 0.91
TTC28Q96AY4 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC20.74■□□□□ 0.91
TTC28Q96AY4 AC011506.1-201ENST00000474329 610 ntBASIC20.74■□□□□ 0.91
TTC28Q96AY4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.74■□□□□ 0.91
TTC28Q96AY4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TTC28Q96AY4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.74■□□□□ 0.91
TTC28Q96AY4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 VENTXP5-201ENST00000523979 775 ntBASIC20.73■□□□□ 0.91
TTC28Q96AY4 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TTC28Q96AY4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TTC28Q96AY4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms