Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NUP54Q7Z3B4 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 AC091874.3-201ENST00000512672 1195 ntBASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 AC007225.1-201ENST00000566331 1836 ntBASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NUP54Q7Z3B4 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 DUSP5P2-201ENST00000426873 1033 ntBASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GABARAPL3-202ENST00000624044 1851 ntBASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP54Q7Z3B4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 FP700111.2-201ENST00000619190 1892 ntBASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP54Q7Z3B4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
NUP54Q7Z3B4 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 AP005212.1-201ENST00000581547 1997 ntBASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 C2orf69P4-201ENST00000565394 541 ntBASIC18.65■□□□□ 0.58
NUP54Q7Z3B4 MYC-209ENST00000641252 345 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms