Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13CQ709C8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS13CQ709C8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS13CQ709C8 MYC-208ENST00000641036 567 ntBASIC16.98■□□□□ 0.31
VPS13CQ709C8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 AC245052.3-201ENST00000450182 901 ntBASIC16.97■□□□□ 0.31
VPS13CQ709C8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 DUX4L26-201ENST00000489078 1255 ntBASIC16.97■□□□□ 0.31
VPS13CQ709C8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 HTR7P1-201ENST00000538670 1336 ntBASIC16.97■□□□□ 0.31
VPS13CQ709C8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 MYB-221ENST00000527615 2381 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS13CQ709C8 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS13CQ709C8 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS13CQ709C8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS13CQ709C8 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.96■□□□□ 0.3
VPS13CQ709C8 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.96■□□□□ 0.3
VPS13CQ709C8 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.95■□□□□ 0.3
VPS13CQ709C8 AC005363.2-201ENST00000618631 242 ntBASIC16.95■□□□□ 0.3
VPS13CQ709C8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VPS13CQ709C8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 LINC01568-207ENST00000641790 1380 ntBASIC16.94■□□□□ 0.3
VPS13CQ709C8 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS13CQ709C8 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS13CQ709C8 AC027702.1-201ENST00000563810 1770 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms