Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.39■□□□□ 0.7
TRIM40Q6P9F5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM40Q6P9F5 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM40Q6P9F5 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 KRT8P36-201ENST00000489121 1440 ntBASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 AC010980.2-201ENST00000587099 1412 ntBASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM40Q6P9F5 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 AC093787.1-201ENST00000450396 207 ntBASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 AC105036.2-201ENST00000569468 176 ntBASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 AC020907.5-201ENST00000624372 1936 ntBASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM40Q6P9F5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 CYP2T3P-201ENST00000601990 817 ntBASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 AL121832.2-201ENST00000610979 668 ntBASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
TRIM40Q6P9F5 AC092720.2-201ENST00000602388 1665 ntBASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 MKRN4P-201ENST00000444706 1521 ntBASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 KRT18P68-201ENST00000392293 1000 ntBASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM40Q6P9F5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.35■□□□□ 0.69
TRIM40Q6P9F5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms