Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
RNFT1Q5M7Z0 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 KRASP1-201ENST00000407852 552 ntBASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNFT1Q5M7Z0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNFT1Q5M7Z0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNFT1Q5M7Z0 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.27■□□□□ 0.51
RNFT1Q5M7Z0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
RNFT1Q5M7Z0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 PLK5-205ENST00000642079 1969 ntBASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 AC124283.5-201ENST00000624661 1809 ntBASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RNFT1Q5M7Z0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 AC023632.3-201ENST00000521633 145 ntBASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 AL121603.2-201ENST00000557373 2117 ntBASIC18.25■□□□□ 0.51
RNFT1Q5M7Z0 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 RPS2P55-201ENST00000397318 883 ntBASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 AC107956.1-201ENST00000494359 873 ntBASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 AC110285.5-201ENST00000611501 352 ntBASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNFT1Q5M7Z0 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
RNFT1Q5M7Z0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms