Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 MCRIP2P1-201ENST00000394346 511 ntBASIC19.22■□□□□ 0.67
RAE1P78406 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.22■□□□□ 0.67
RAE1P78406 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.22■□□□□ 0.67
RAE1P78406 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.22■□□□□ 0.67
RAE1P78406 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.22■□□□□ 0.67
RAE1P78406 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
RAE1P78406 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.22■□□□□ 0.67
RAE1P78406 AC231657.2-201ENST00000624556 255 ntBASIC19.22■□□□□ 0.67
RAE1P78406 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RAE1P78406 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RAE1P78406 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
RAE1P78406 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 AC004911.1-201ENST00000416316 871 ntBASIC19.21■□□□□ 0.67
RAE1P78406 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.21■□□□□ 0.67
RAE1P78406 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RAE1P78406 BX119927.1-201ENST00000636596 1552 ntBASIC19.21■□□□□ 0.67
RAE1P78406 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.21■□□□□ 0.67
RAE1P78406 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.21■□□□□ 0.67
RAE1P78406 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RAE1P78406 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
RAE1P78406 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.2■□□□□ 0.66
RAE1P78406 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.2■□□□□ 0.66
RAE1P78406 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 AC007322.1-201ENST00000426983 750 ntBASIC19.2■□□□□ 0.66
RAE1P78406 IKBKGP1-201ENST00000612193 1073 ntBASIC19.2■□□□□ 0.66
RAE1P78406 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.2■□□□□ 0.66
RAE1P78406 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RAE1P78406 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.2■□□□□ 0.66
RAE1P78406 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RAE1P78406 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RAE1P78406 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RAE1P78406 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RAE1P78406 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 PTBP1P-201ENST00000554374 1601 ntBASIC19.19■□□□□ 0.66
RAE1P78406 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 AL691432.2-201ENST00000607222 2038 ntBASIC19.19■□□□□ 0.66
RAE1P78406 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
RAE1P78406 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.19■□□□□ 0.66
RAE1P78406 AL355472.2-201ENST00000422958 438 ntBASIC19.19■□□□□ 0.66
RAE1P78406 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
RAE1P78406 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.19■□□□□ 0.66
RAE1P78406 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.19■□□□□ 0.66
RAE1P78406 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RAE1P78406 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.19■□□□□ 0.66
RAE1P78406 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RAE1P78406 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.19■□□□□ 0.66
RAE1P78406 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
RAE1P78406 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RAE1P78406 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.18■□□□□ 0.66
RAE1P78406 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RAE1P78406 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.18■□□□□ 0.66
RAE1P78406 AC105020.6-201ENST00000621523 1217 ntBASIC19.18■□□□□ 0.66
RAE1P78406 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.18■□□□□ 0.66
RAE1P78406 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RAE1P78406 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RAE1P78406 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
RAE1P78406 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
RAE1P78406 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RAE1P78406 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
RAE1P78406 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.17■□□□□ 0.66
RAE1P78406 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.17■□□□□ 0.66
RAE1P78406 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
RAE1P78406 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms