Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC23.48■■□□□ 1.35
HMGCS2P54868 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC23.48■■□□□ 1.35
HMGCS2P54868 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC23.48■■□□□ 1.35
HMGCS2P54868 GRAP-204ENST00000573099 846 ntTSL 3 BASIC23.48■■□□□ 1.35
HMGCS2P54868 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
HMGCS2P54868 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC23.47■■□□□ 1.35
HMGCS2P54868 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC23.47■■□□□ 1.35
HMGCS2P54868 KRT16P5-201ENST00000455284 522 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 AP003071.4-201ENST00000562276 1284 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC23.47■■□□□ 1.35
HMGCS2P54868 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC23.47■■□□□ 1.35
HMGCS2P54868 AC012306.2-201ENST00000609350 630 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 AC097493.4-201ENST00000641197 219 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.47■■□□□ 1.35
HMGCS2P54868 NBPF21P-201ENST00000425093 1451 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
HMGCS2P54868 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
HMGCS2P54868 Z98882.1-201ENST00000622160 2253 ntBASIC23.47■■□□□ 1.35
HMGCS2P54868 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.46■■□□□ 1.35
HMGCS2P54868 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC23.46■■□□□ 1.35
HMGCS2P54868 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
HMGCS2P54868 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.46■■□□□ 1.35
HMGCS2P54868 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 MAX-217ENST00000557277 728 ntTSL 3 BASIC23.46■■□□□ 1.35
HMGCS2P54868 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC23.46■■□□□ 1.35
HMGCS2P54868 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC23.46■■□□□ 1.35
HMGCS2P54868 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
HMGCS2P54868 RPS15-203ENST00000586096 570 ntTSL 2 BASIC23.46■■□□□ 1.35
HMGCS2P54868 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
HMGCS2P54868 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
HMGCS2P54868 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
HMGCS2P54868 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.35
HMGCS2P54868 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC23.45■■□□□ 1.35
HMGCS2P54868 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC23.45■■□□□ 1.35
HMGCS2P54868 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC23.45■■□□□ 1.34
HMGCS2P54868 F2R-202ENST00000505600 442 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.45■■□□□ 1.34
HMGCS2P54868 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 CD177P1-201ENST00000606252 935 ntBASIC23.45■■□□□ 1.34
HMGCS2P54868 AL353708.3-201ENST00000610272 989 ntBASIC23.45■■□□□ 1.34
HMGCS2P54868 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGCS2P54868 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC23.45■■□□□ 1.34
HMGCS2P54868 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGCS2P54868 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
HMGCS2P54868 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
HMGCS2P54868 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.44■■□□□ 1.34
HMGCS2P54868 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC23.44■■□□□ 1.34
HMGCS2P54868 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC23.44■■□□□ 1.34
HMGCS2P54868 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGCS2P54868 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
HMGCS2P54868 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.44■■□□□ 1.34
HMGCS2P54868 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGCS2P54868 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.44■■□□□ 1.34
HMGCS2P54868 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.43■■□□□ 1.34
HMGCS2P54868 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC23.43■■□□□ 1.34
HMGCS2P54868 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 RCN1P1-201ENST00000400413 996 ntBASIC23.43■■□□□ 1.34
HMGCS2P54868 AL355355.2-201ENST00000442321 338 ntBASIC23.43■■□□□ 1.34
HMGCS2P54868 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGCS2P54868 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms