Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC28.24■■■□□ 2.11
MSH6P52701 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH6P52701 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH6P52701 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC28.23■■■□□ 2.11
MSH6P52701 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC28.23■■■□□ 2.11
MSH6P52701 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH6P52701 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH6P52701 AK4P3-201ENST00000418260 669 ntBASIC28.23■■■□□ 2.11
MSH6P52701 AC023632.3-201ENST00000521633 145 ntBASIC28.23■■■□□ 2.11
MSH6P52701 C2orf69P3-201ENST00000565542 1120 ntBASIC28.23■■■□□ 2.11
MSH6P52701 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC28.23■■■□□ 2.11
MSH6P52701 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
MSH6P52701 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC28.22■■■□□ 2.11
MSH6P52701 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH6P52701 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH6P52701 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC28.22■■■□□ 2.11
MSH6P52701 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
MSH6P52701 MYC-208ENST00000641036 567 ntBASIC28.22■■■□□ 2.11
MSH6P52701 COMT-203ENST00000403184 2217 ntTSL 2 BASIC28.22■■■□□ 2.11
MSH6P52701 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
MSH6P52701 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC28.21■■■□□ 2.11
MSH6P52701 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH6P52701 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC28.2■■■□□ 2.11
MSH6P52701 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH6P52701 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH6P52701 COPE-203ENST00000351079 907 ntTSL 2 BASIC28.2■■■□□ 2.1
MSH6P52701 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH6P52701 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC28.2■■■□□ 2.1
MSH6P52701 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH6P52701 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC28.2■■■□□ 2.1
MSH6P52701 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC28.19■■■□□ 2.1
MSH6P52701 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
MSH6P52701 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
MSH6P52701 KRT18P48-201ENST00000434763 852 ntBASIC28.19■■■□□ 2.1
MSH6P52701 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH6P52701 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
MSH6P52701 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC28.19■■■□□ 2.1
MSH6P52701 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC28.18■■■□□ 2.1
MSH6P52701 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC28.18■■■□□ 2.1
MSH6P52701 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
MSH6P52701 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC28.18■■■□□ 2.1
MSH6P52701 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC28.18■■■□□ 2.1
MSH6P52701 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC28.18■■■□□ 2.1
MSH6P52701 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC28.18■■■□□ 2.1
MSH6P52701 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.18■■■□□ 2.1
MSH6P52701 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
MSH6P52701 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
MSH6P52701 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC28.17■■■□□ 2.1
MSH6P52701 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
MSH6P52701 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC28.17■■■□□ 2.1
MSH6P52701 ECEL1P2-202ENST00000465689 757 ntBASIC28.17■■■□□ 2.1
MSH6P52701 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC28.17■■■□□ 2.1
MSH6P52701 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC28.17■■■□□ 2.1
MSH6P52701 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
MSH6P52701 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC28.16■■■□□ 2.1
MSH6P52701 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC28.16■■■□□ 2.1
MSH6P52701 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 AC009947.2-201ENST00000444014 672 ntBASIC28.16■■■□□ 2.1
MSH6P52701 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
MSH6P52701 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC28.16■■■□□ 2.1
MSH6P52701 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
MSH6P52701 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC28.15■■■□□ 2.1
MSH6P52701 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC28.15■■■□□ 2.1
MSH6P52701 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC28.15■■■□□ 2.1
MSH6P52701 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC28.15■■■□□ 2.1
MSH6P52701 EGLN1P1-201ENST00000531623 762 ntBASIC28.15■■■□□ 2.1
MSH6P52701 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC28.15■■■□□ 2.1
MSH6P52701 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
MSH6P52701 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms