Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.3■■□□□ 1.16
CLCN3P51790 MTDHP1-201ENST00000605323 784 ntBASIC22.3■■□□□ 1.16
CLCN3P51790 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.3■■□□□ 1.16
CLCN3P51790 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.3■■□□□ 1.16
CLCN3P51790 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
CLCN3P51790 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC22.3■■□□□ 1.16
CLCN3P51790 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CLCN3P51790 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.3■■□□□ 1.16
CLCN3P51790 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
CLCN3P51790 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 FP700111.2-201ENST00000619190 1892 ntBASIC22.29■■□□□ 1.16
CLCN3P51790 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
CLCN3P51790 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.29■■□□□ 1.16
CLCN3P51790 HES2-206ENST00000489730 730 ntTSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CLCN3P51790 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC22.29■■□□□ 1.16
CLCN3P51790 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC22.28■■□□□ 1.16
CLCN3P51790 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.28■■□□□ 1.16
CLCN3P51790 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC22.28■■□□□ 1.16
CLCN3P51790 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.28■■□□□ 1.16
CLCN3P51790 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CLCN3P51790 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC22.28■■□□□ 1.16
CLCN3P51790 RPS2P4-201ENST00000476944 856 ntBASIC22.28■■□□□ 1.16
CLCN3P51790 AC008550.1-201ENST00000511500 884 ntBASIC22.28■■□□□ 1.16
CLCN3P51790 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.28■■□□□ 1.16
CLCN3P51790 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC22.28■■□□□ 1.16
CLCN3P51790 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC22.28■■□□□ 1.16
CLCN3P51790 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.28■■□□□ 1.16
CLCN3P51790 SPIB-206ENST00000596074 847 ntTSL 2 BASIC22.28■■□□□ 1.16
CLCN3P51790 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.27■■□□□ 1.16
CLCN3P51790 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CLCN3P51790 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.27■■□□□ 1.16
CLCN3P51790 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC22.27■■□□□ 1.16
CLCN3P51790 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CLCN3P51790 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 AL023875.1-201ENST00000640777 796 ntBASIC22.27■■□□□ 1.16
CLCN3P51790 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CLCN3P51790 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CLCN3P51790 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
CLCN3P51790 AC006128.1-201ENST00000624704 1661 ntBASIC22.26■■□□□ 1.15
CLCN3P51790 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 AL596275.1-201ENST00000423464 877 ntBASIC22.26■■□□□ 1.15
CLCN3P51790 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC22.26■■□□□ 1.15
CLCN3P51790 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
CLCN3P51790 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.26■■□□□ 1.15
CLCN3P51790 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CLCN3P51790 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.26■■□□□ 1.15
CLCN3P51790 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLCN3P51790 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CLCN3P51790 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
CLCN3P51790 AC124283.5-201ENST00000624661 1809 ntBASIC22.25■■□□□ 1.15
CLCN3P51790 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.25■■□□□ 1.15
CLCN3P51790 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
CLCN3P51790 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CLCN3P51790 ISG20-202ENST00000379224 540 ntTSL 3 BASIC22.25■■□□□ 1.15
CLCN3P51790 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.25■■□□□ 1.15
CLCN3P51790 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.25■■□□□ 1.15
CLCN3P51790 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CLCN3P51790 AC023632.3-201ENST00000521633 145 ntBASIC22.25■■□□□ 1.15
CLCN3P51790 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms