Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 MIR663A-201ENST00000385250 93 ntBASIC19.59■□□□□ 0.73
HNF4AP41235 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.59■□□□□ 0.73
HNF4AP41235 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
HNF4AP41235 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.59■□□□□ 0.73
HNF4AP41235 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
HNF4AP41235 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HNF4AP41235 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HNF4AP41235 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.58■□□□□ 0.73
HNF4AP41235 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.58■□□□□ 0.73
HNF4AP41235 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.73
HNF4AP41235 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.58■□□□□ 0.73
HNF4AP41235 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
HNF4AP41235 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HNF4AP41235 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.58■□□□□ 0.72
HNF4AP41235 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.58■□□□□ 0.72
HNF4AP41235 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.58■□□□□ 0.72
HNF4AP41235 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
HNF4AP41235 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.58■□□□□ 0.72
HNF4AP41235 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.58■□□□□ 0.72
HNF4AP41235 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 RAP2CP1-201ENST00000605103 478 ntBASIC19.58■□□□□ 0.72
HNF4AP41235 AC008694.1-202ENST00000636953 945 ntBASIC19.58■□□□□ 0.72
HNF4AP41235 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.58■□□□□ 0.72
HNF4AP41235 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
HNF4AP41235 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 CYP21A1P-202ENST00000354927 1481 ntBASIC19.58■□□□□ 0.72
HNF4AP41235 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.58■□□□□ 0.72
HNF4AP41235 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HNF4AP41235 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
HNF4AP41235 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.57■□□□□ 0.72
HNF4AP41235 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
HNF4AP41235 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.57■□□□□ 0.72
HNF4AP41235 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.57■□□□□ 0.72
HNF4AP41235 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.57■□□□□ 0.72
HNF4AP41235 CROCCP5-201ENST00000436658 830 ntBASIC19.57■□□□□ 0.72
HNF4AP41235 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 RARRES2P4-201ENST00000514074 484 ntBASIC19.57■□□□□ 0.72
HNF4AP41235 AL356652.1-201ENST00000615962 565 ntBASIC19.57■□□□□ 0.72
HNF4AP41235 AC100791.3-201ENST00000617619 330 ntBASIC19.57■□□□□ 0.72
HNF4AP41235 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
HNF4AP41235 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HNF4AP41235 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HNF4AP41235 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.56■□□□□ 0.72
HNF4AP41235 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.56■□□□□ 0.72
HNF4AP41235 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 AC006970.2-201ENST00000450065 779 ntBASIC19.56■□□□□ 0.72
HNF4AP41235 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.56■□□□□ 0.72
HNF4AP41235 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.56■□□□□ 0.72
HNF4AP41235 AC069236.1-201ENST00000604339 616 ntBASIC19.56■□□□□ 0.72
HNF4AP41235 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HNF4AP41235 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.56■□□□□ 0.72
HNF4AP41235 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.56■□□□□ 0.72
HNF4AP41235 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.56■□□□□ 0.72
HNF4AP41235 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
HNF4AP41235 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.55■□□□□ 0.72
HNF4AP41235 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HNF4AP41235 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
HNF4AP41235 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms