Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC1P18827 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC1P18827 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SDC1P18827 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SDC1P18827 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SDC1P18827 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 PGM5P4-201ENST00000421970 445 ntBASIC19.26■□□□□ 0.67
SDC1P18827 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.26■□□□□ 0.67
SDC1P18827 AC007322.4-201ENST00000509611 723 ntBASIC19.26■□□□□ 0.67
SDC1P18827 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.26■□□□□ 0.67
SDC1P18827 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SDC1P18827 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC1P18827 AC016405.3-201ENST00000607710 860 ntBASIC19.26■□□□□ 0.67
SDC1P18827 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SDC1P18827 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.26■□□□□ 0.67
SDC1P18827 AC013268.1-206ENST00000638368 961 ntBASIC19.26■□□□□ 0.67
SDC1P18827 AC112229.1-201ENST00000639295 961 ntBASIC19.26■□□□□ 0.67
SDC1P18827 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SDC1P18827 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
SDC1P18827 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
SDC1P18827 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.25■□□□□ 0.67
SDC1P18827 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.25■□□□□ 0.67
SDC1P18827 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 KRT18P11-201ENST00000435214 1283 ntBASIC19.25■□□□□ 0.67
SDC1P18827 KRT18P5-201ENST00000436075 1291 ntBASIC19.25■□□□□ 0.67
SDC1P18827 AC137761.2-201ENST00000561729 223 ntBASIC19.25■□□□□ 0.67
SDC1P18827 AC145350.3-201ENST00000569033 163 ntBASIC19.25■□□□□ 0.67
SDC1P18827 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
SDC1P18827 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SDC1P18827 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC1P18827 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.24■□□□□ 0.67
SDC1P18827 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SDC1P18827 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SDC1P18827 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 BX119927.1-201ENST00000636596 1552 ntBASIC19.24■□□□□ 0.67
SDC1P18827 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC1P18827 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.24■□□□□ 0.67
SDC1P18827 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
SDC1P18827 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.24■□□□□ 0.67
SDC1P18827 AL162412.1-201ENST00000567129 965 ntBASIC19.24■□□□□ 0.67
SDC1P18827 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.24■□□□□ 0.67
SDC1P18827 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.24■□□□□ 0.67
SDC1P18827 MFSD11-216ENST00000590393 1141 ntBASIC19.24■□□□□ 0.67
SDC1P18827 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC1P18827 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC1P18827 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
SDC1P18827 AL691432.2-201ENST00000607222 2038 ntBASIC19.24■□□□□ 0.67
SDC1P18827 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
SDC1P18827 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC1P18827 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
SDC1P18827 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.23■□□□□ 0.67
SDC1P18827 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.23■□□□□ 0.67
SDC1P18827 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC1P18827 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC1P18827 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC1P18827 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
SDC1P18827 AC125437.2-201ENST00000625180 2167 ntBASIC19.23■□□□□ 0.67
SDC1P18827 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC1P18827 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SDC1P18827 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC1P18827 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms