Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
SIX3O95343 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.76■□□□□ 0.75
SIX3O95343 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SIX3O95343 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SIX3O95343 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.76■□□□□ 0.75
SIX3O95343 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
SIX3O95343 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SIX3O95343 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.75■□□□□ 0.75
SIX3O95343 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.75■□□□□ 0.75
SIX3O95343 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.75■□□□□ 0.75
SIX3O95343 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.75■□□□□ 0.75
SIX3O95343 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.75■□□□□ 0.75
SIX3O95343 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.75■□□□□ 0.75
SIX3O95343 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SIX3O95343 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SIX3O95343 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.74■□□□□ 0.75
SIX3O95343 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.74■□□□□ 0.75
SIX3O95343 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.74■□□□□ 0.75
SIX3O95343 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SIX3O95343 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SIX3O95343 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SIX3O95343 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SIX3O95343 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.73■□□□□ 0.75
SIX3O95343 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SIX3O95343 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.73■□□□□ 0.75
SIX3O95343 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.73■□□□□ 0.75
SIX3O95343 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.73■□□□□ 0.75
SIX3O95343 AL591742.1-201ENST00000604433 565 ntBASIC19.73■□□□□ 0.75
SIX3O95343 AC016405.3-201ENST00000607710 860 ntBASIC19.73■□□□□ 0.75
SIX3O95343 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SIX3O95343 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SIX3O95343 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.72■□□□□ 0.75
SIX3O95343 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX3O95343 AC007952.6-201ENST00000573168 2673 ntBASIC19.72■□□□□ 0.75
SIX3O95343 AC003957.1-201ENST00000625108 2673 ntBASIC19.72■□□□□ 0.75
SIX3O95343 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SIX3O95343 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
SIX3O95343 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 KRT18P5-201ENST00000436075 1291 ntBASIC19.72■□□□□ 0.75
SIX3O95343 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.72■□□□□ 0.75
SIX3O95343 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SIX3O95343 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.72■□□□□ 0.75
SIX3O95343 AC125437.2-201ENST00000625180 2167 ntBASIC19.72■□□□□ 0.75
SIX3O95343 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.72■□□□□ 0.75
SIX3O95343 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.72■□□□□ 0.75
SIX3O95343 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SIX3O95343 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SIX3O95343 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms