Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.82■□□□□ 0.76
SDC3O75056 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SDC3O75056 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.82■□□□□ 0.76
SDC3O75056 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.82■□□□□ 0.76
SDC3O75056 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.82■□□□□ 0.76
SDC3O75056 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.82■□□□□ 0.76
SDC3O75056 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SDC3O75056 AC244015.2-201ENST00000616358 1861 ntBASIC19.82■□□□□ 0.76
SDC3O75056 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
SDC3O75056 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SDC3O75056 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.81■□□□□ 0.76
SDC3O75056 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC19.81■□□□□ 0.76
SDC3O75056 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SDC3O75056 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 Z98882.1-201ENST00000622160 2253 ntBASIC19.81■□□□□ 0.76
SDC3O75056 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SDC3O75056 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SDC3O75056 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.8■□□□□ 0.76
SDC3O75056 PRKY-204ENST00000533551 1019 ntBASIC19.8■□□□□ 0.76
SDC3O75056 BX088651.1-201ENST00000540551 451 ntBASIC19.8■□□□□ 0.76
SDC3O75056 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SDC3O75056 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.8■□□□□ 0.76
SDC3O75056 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SDC3O75056 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 AC124283.5-201ENST00000624661 1809 ntBASIC19.8■□□□□ 0.76
SDC3O75056 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SDC3O75056 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SDC3O75056 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SDC3O75056 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SDC3O75056 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.8■□□□□ 0.76
SDC3O75056 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC3O75056 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.79■□□□□ 0.76
SDC3O75056 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC3O75056 KRT17P2-201ENST00000300992 1314 ntBASIC19.79■□□□□ 0.76
SDC3O75056 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.79■□□□□ 0.76
SDC3O75056 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.79■□□□□ 0.76
SDC3O75056 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.79■□□□□ 0.76
SDC3O75056 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 TSPY15P-201ENST00000457163 923 ntBASIC19.79■□□□□ 0.76
SDC3O75056 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
SDC3O75056 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.79■□□□□ 0.76
SDC3O75056 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SDC3O75056 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 AC113410.3-201ENST00000623366 203 ntBASIC19.79■□□□□ 0.76
SDC3O75056 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.79■□□□□ 0.76
SDC3O75056 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SDC3O75056 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SDC3O75056 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.78■□□□□ 0.76
SDC3O75056 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SDC3O75056 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SDC3O75056 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SDC3O75056 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
SDC3O75056 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.78■□□□□ 0.76
SDC3O75056 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms