Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC27.17■■□□□ 1.94
MSH5O43196 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC27.17■■□□□ 1.94
MSH5O43196 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH5O43196 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
MSH5O43196 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
MSH5O43196 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
MSH5O43196 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
MSH5O43196 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH5O43196 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC27.16■■□□□ 1.94
MSH5O43196 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC27.16■■□□□ 1.94
MSH5O43196 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC27.16■■□□□ 1.94
MSH5O43196 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC27.16■■□□□ 1.94
MSH5O43196 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC27.16■■□□□ 1.94
MSH5O43196 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC27.16■■□□□ 1.94
MSH5O43196 AC120498.10-201ENST00000621827 505 ntBASIC27.16■■□□□ 1.94
MSH5O43196 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.16■■□□□ 1.94
MSH5O43196 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC27.16■■□□□ 1.94
MSH5O43196 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC27.16■■□□□ 1.94
MSH5O43196 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH5O43196 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC27.15■■□□□ 1.94
MSH5O43196 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC27.15■■□□□ 1.94
MSH5O43196 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
MSH5O43196 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC27.15■■□□□ 1.94
MSH5O43196 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC27.15■■□□□ 1.94
MSH5O43196 AC079089.2-201ENST00000531211 1277 ntBASIC27.15■■□□□ 1.94
MSH5O43196 EEF1DP3-203ENST00000566025 782 ntBASIC27.15■■□□□ 1.94
MSH5O43196 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC27.15■■□□□ 1.94
MSH5O43196 AC104072.1-201ENST00000568817 668 ntBASIC27.15■■□□□ 1.94
MSH5O43196 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC27.15■■□□□ 1.94
MSH5O43196 AL359736.2-201ENST00000621992 437 ntBASIC27.15■■□□□ 1.94
MSH5O43196 FAM197Y4-202ENST00000622692 608 ntBASIC27.15■■□□□ 1.94
MSH5O43196 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.15■■□□□ 1.94
MSH5O43196 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC27.15■■□□□ 1.94
MSH5O43196 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
MSH5O43196 EML3-217ENST00000531557 2509 ntTSL 5 BASIC27.15■■□□□ 1.94
MSH5O43196 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
MSH5O43196 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH5O43196 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH5O43196 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC27.14■■□□□ 1.94
MSH5O43196 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC27.14■■□□□ 1.94
MSH5O43196 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH5O43196 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
MSH5O43196 MTND2P9-201ENST00000422293 931 ntBASIC27.14■■□□□ 1.94
MSH5O43196 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH5O43196 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
MSH5O43196 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.14■■□□□ 1.94
MSH5O43196 CBFB-203ENST00000561924 584 ntTSL 5 BASIC27.14■■□□□ 1.94
MSH5O43196 AC053503.5-201ENST00000601508 636 ntBASIC27.14■■□□□ 1.94
MSH5O43196 CSNK1A1-209ENST00000606299 1075 ntTSL 3 BASIC27.14■■□□□ 1.94
MSH5O43196 AL157392.4-201ENST00000609756 345 ntBASIC27.14■■□□□ 1.94
MSH5O43196 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC27.14■■□□□ 1.93
MSH5O43196 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.93
MSH5O43196 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC27.13■■□□□ 1.93
MSH5O43196 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
MSH5O43196 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 AC009118.3-201ENST00000622896 873 ntBASIC27.13■■□□□ 1.93
MSH5O43196 AC027348.2-201ENST00000624375 642 ntBASIC27.13■■□□□ 1.93
MSH5O43196 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC27.13■■□□□ 1.93
MSH5O43196 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC27.13■■□□□ 1.93
MSH5O43196 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC27.13■■□□□ 1.93
MSH5O43196 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 MIR718-201ENST00000390190 70 ntBASIC27.12■■□□□ 1.93
MSH5O43196 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC27.12■■□□□ 1.93
MSH5O43196 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC27.12■■□□□ 1.93
MSH5O43196 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 NPM1P28-201ENST00000492269 840 ntBASIC27.12■■□□□ 1.93
MSH5O43196 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC27.12■■□□□ 1.93
MSH5O43196 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC27.12■■□□□ 1.93
MSH5O43196 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC27.12■■□□□ 1.93
MSH5O43196 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC27.12■■□□□ 1.93
MSH5O43196 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC27.12■■□□□ 1.93
MSH5O43196 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC27.12■■□□□ 1.93
MSH5O43196 CLIC4P2-201ENST00000601934 717 ntBASIC27.12■■□□□ 1.93
MSH5O43196 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 AC073912.3-201ENST00000624414 853 ntBASIC27.12■■□□□ 1.93
MSH5O43196 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 AC087289.5-201ENST00000586076 3175 ntBASIC27.12■■□□□ 1.93
MSH5O43196 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
MSH5O43196 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
MSH5O43196 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms