Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MFF-203ENST00000349901 1716 ntTSL 2 BASIC25.51■■□□□ 1.67
NPHP1O15259 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC25.51■■□□□ 1.67
NPHP1O15259 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
NPHP1O15259 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.51■■□□□ 1.67
NPHP1O15259 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
NPHP1O15259 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP1O15259 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.5■■□□□ 1.67
NPHP1O15259 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.5■■□□□ 1.67
NPHP1O15259 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
NPHP1O15259 STK25-205ENST00000405883 1904 ntTSL 2 BASIC25.5■■□□□ 1.67
NPHP1O15259 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC25.5■■□□□ 1.67
NPHP1O15259 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.5■■□□□ 1.67
NPHP1O15259 SNX21-213ENST00000614929 587 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP1O15259 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC25.5■■□□□ 1.67
NPHP1O15259 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 EXOC3-AS1-202ENST00000623673 1663 ntBASIC25.49■■□□□ 1.67
NPHP1O15259 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
NPHP1O15259 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC25.49■■□□□ 1.67
NPHP1O15259 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.49■■□□□ 1.67
NPHP1O15259 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.49■■□□□ 1.67
NPHP1O15259 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
NPHP1O15259 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
NPHP1O15259 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
NPHP1O15259 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC25.48■■□□□ 1.67
NPHP1O15259 AL355355.2-201ENST00000442321 338 ntBASIC25.48■■□□□ 1.67
NPHP1O15259 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP1O15259 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 AC026471.5-201ENST00000615068 467 ntBASIC25.48■■□□□ 1.67
NPHP1O15259 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC25.48■■□□□ 1.67
NPHP1O15259 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
NPHP1O15259 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
NPHP1O15259 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC25.47■■□□□ 1.67
NPHP1O15259 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC25.47■■□□□ 1.67
NPHP1O15259 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP1O15259 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 CBFB-203ENST00000561924 584 ntTSL 5 BASIC25.47■■□□□ 1.67
NPHP1O15259 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP1O15259 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC25.47■■□□□ 1.67
NPHP1O15259 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC25.47■■□□□ 1.67
NPHP1O15259 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NPHP1O15259 AC242852.2-201ENST00000615738 1807 ntBASIC25.47■■□□□ 1.67
NPHP1O15259 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP1O15259 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP1O15259 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
NPHP1O15259 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
NPHP1O15259 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
NPHP1O15259 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC25.46■■□□□ 1.67
NPHP1O15259 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
NPHP1O15259 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP1O15259 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.45■■□□□ 1.67
NPHP1O15259 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP1O15259 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.45■■□□□ 1.67
NPHP1O15259 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
NPHP1O15259 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC25.45■■□□□ 1.66
NPHP1O15259 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC25.45■■□□□ 1.66
NPHP1O15259 AP003071.4-201ENST00000562276 1284 ntBASIC25.45■■□□□ 1.66
NPHP1O15259 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.45■■□□□ 1.66
NPHP1O15259 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NPHP1O15259 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms