Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV40A0A0B4J280 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 RPPH1-201ENST00000516869 333 ntBASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 AC005829.2-201ENST00000571422 1056 ntBASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV40A0A0B4J280 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 UBE2SP1-201ENST00000450587 669 ntBASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAV40A0A0B4J280 FEM1AP4-201ENST00000443167 1987 ntBASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 RPS2P4-201ENST00000476944 856 ntBASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 RN7SL471P-201ENST00000580476 299 ntBASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 MIR2861-201ENST00000636310 90 ntBASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 AF106564.1-201ENST00000607058 2553 ntBASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV40A0A0B4J280 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms