Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
MKS1Q9NXB0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
MKS1Q9NXB0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.02■□□□□ 0.79
MKS1Q9NXB0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 CCDC92B-201ENST00000575506 885 ntBASIC20.01■□□□□ 0.79
MKS1Q9NXB0 FAM21FP-204ENST00000608637 956 ntBASIC20.01■□□□□ 0.79
MKS1Q9NXB0 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.01■□□□□ 0.79
MKS1Q9NXB0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
MKS1Q9NXB0 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20■□□□□ 0.79
MKS1Q9NXB0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20■□□□□ 0.79
MKS1Q9NXB0 KRT18P20-201ENST00000548986 1279 ntBASIC20■□□□□ 0.79
MKS1Q9NXB0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20■□□□□ 0.79
MKS1Q9NXB0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20■□□□□ 0.79
MKS1Q9NXB0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
MKS1Q9NXB0 AC110285.6-201ENST00000617652 491 ntBASIC20■□□□□ 0.79
MKS1Q9NXB0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20■□□□□ 0.79
MKS1Q9NXB0 RBM17P2-201ENST00000616397 1405 ntBASIC20■□□□□ 0.79
MKS1Q9NXB0 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20■□□□□ 0.79
MKS1Q9NXB0 TNXA-203ENST00000507684 2038 ntBASIC20■□□□□ 0.79
MKS1Q9NXB0 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20■□□□□ 0.79
MKS1Q9NXB0 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.99■□□□□ 0.79
MKS1Q9NXB0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 MIR6084-201ENST00000622012 110 ntBASIC19.99■□□□□ 0.79
MKS1Q9NXB0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MKS1Q9NXB0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AC093484.2-201ENST00000580996 2166 ntBASIC19.98■□□□□ 0.79
MKS1Q9NXB0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AP000974.1-201ENST00000623909 2387 ntBASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 SUDS3P1-201ENST00000505831 966 ntBASIC19.98■□□□□ 0.79
MKS1Q9NXB0 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 AP001160.3-201ENST00000601484 763 ntBASIC19.98■□□□□ 0.79
MKS1Q9NXB0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.98■□□□□ 0.79
MKS1Q9NXB0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MKS1Q9NXB0 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
MKS1Q9NXB0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MKS1Q9NXB0 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms