Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CUEDC1Q9NWM3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.73
CUEDC1Q9NWM3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 PGM5P4-201ENST00000421970 445 ntBASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 AL138781.1-201ENST00000566567 1274 ntBASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 MIR4651-201ENST00000582622 73 ntBASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 AC133041.1-202ENST00000642053 222 ntBASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CUEDC1Q9NWM3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 AC073210.2-201ENST00000430369 194 ntBASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 AC092667.1-201ENST00000434301 2586 ntBASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CUEDC1Q9NWM3 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 LSM12P1-201ENST00000411836 588 ntBASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 AC069152.1-201ENST00000438030 544 ntBASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 AC098934.4-201ENST00000564127 592 ntBASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 AL589743.5-201ENST00000616611 1050 ntBASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CUEDC1Q9NWM3 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CUEDC1Q9NWM3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms