Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HINT3Q9NQE9 AC125437.2-201ENST00000625180 2167 ntBASIC18.28■□□□□ 0.52
HINT3Q9NQE9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.28■□□□□ 0.52
HINT3Q9NQE9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HINT3Q9NQE9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HINT3Q9NQE9 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.28■□□□□ 0.52
HINT3Q9NQE9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 AC010141.2-201ENST00000452426 721 ntBASIC18.27■□□□□ 0.52
HINT3Q9NQE9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HINT3Q9NQE9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
HINT3Q9NQE9 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.26■□□□□ 0.51
HINT3Q9NQE9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 AC120498.10-201ENST00000621827 505 ntBASIC18.26■□□□□ 0.51
HINT3Q9NQE9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HINT3Q9NQE9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 RNF165-205ENST00000588679 2904 ntBASIC18.25■□□□□ 0.51
HINT3Q9NQE9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.25■□□□□ 0.51
HINT3Q9NQE9 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HINT3Q9NQE9 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms