Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.81■■□□□ 1.08
SIX2Q9NPC8 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SIX2Q9NPC8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 PGM5P4-201ENST00000421970 445 ntBASIC21.79■■□□□ 1.08
SIX2Q9NPC8 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 AC100791.3-201ENST00000617619 330 ntBASIC21.79■■□□□ 1.08
SIX2Q9NPC8 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX2Q9NPC8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.78■■□□□ 1.08
SIX2Q9NPC8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 MCRIP2P1-201ENST00000394346 511 ntBASIC21.78■■□□□ 1.08
SIX2Q9NPC8 AC004911.1-201ENST00000416316 871 ntBASIC21.78■■□□□ 1.08
SIX2Q9NPC8 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX2Q9NPC8 BX119927.1-201ENST00000636596 1552 ntBASIC21.78■■□□□ 1.08
SIX2Q9NPC8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 PTBP1P-201ENST00000554374 1601 ntBASIC21.77■■□□□ 1.08
SIX2Q9NPC8 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 IKBKGP1-201ENST00000612193 1073 ntBASIC21.77■■□□□ 1.08
SIX2Q9NPC8 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SIX2Q9NPC8 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SIX2Q9NPC8 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 AC231657.2-201ENST00000624556 255 ntBASIC21.76■■□□□ 1.07
SIX2Q9NPC8 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.76■■□□□ 1.07
SIX2Q9NPC8 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 AL691432.2-201ENST00000607222 2038 ntBASIC21.75■■□□□ 1.07
SIX2Q9NPC8 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.75■■□□□ 1.07
SIX2Q9NPC8 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms