Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 AC125437.2-201ENST00000625180 2167 ntBASIC17.62■□□□□ 0.41
NKX3-1Q99801 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 AC079140.4-201ENST00000507448 529 ntBASIC17.62■□□□□ 0.41
NKX3-1Q99801 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.62■□□□□ 0.41
NKX3-1Q99801 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NKX3-1Q99801 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.61■□□□□ 0.41
NKX3-1Q99801 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 AC116562.4-201ENST00000641316 2276 ntBASIC17.6■□□□□ 0.41
NKX3-1Q99801 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 NME4-202ENST00000382940 766 ntTSL 3 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 MIR5787-201ENST00000611784 55 ntBASIC17.6■□□□□ 0.41
NKX3-1Q99801 NME4-211ENST00000620944 1193 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 KRT87P-202ENST00000534226 1464 ntBASIC17.6■□□□□ 0.41
NKX3-1Q99801 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
NKX3-1Q99801 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
NKX3-1Q99801 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.59■□□□□ 0.41
NKX3-1Q99801 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
NKX3-1Q99801 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
NKX3-1Q99801 AL354811.1-201ENST00000610286 706 ntBASIC17.59■□□□□ 0.41
NKX3-1Q99801 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 AC008175.2-201ENST00000612840 297 ntBASIC17.59■□□□□ 0.41
NKX3-1Q99801 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.59■□□□□ 0.41
NKX3-1Q99801 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
NKX3-1Q99801 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
NKX3-1Q99801 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.58■□□□□ 0.41
NKX3-1Q99801 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
NKX3-1Q99801 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
NKX3-1Q99801 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
NKX3-1Q99801 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.58■□□□□ 0.41
NKX3-1Q99801 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
NKX3-1Q99801 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.58■□□□□ 0.41
NKX3-1Q99801 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC17.58■□□□□ 0.4
NKX3-1Q99801 AC026271.2-201ENST00000428091 497 ntBASIC17.58■□□□□ 0.4
NKX3-1Q99801 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.58■□□□□ 0.4
NKX3-1Q99801 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.58■□□□□ 0.4
NKX3-1Q99801 SLC7A5P2-201ENST00000553010 536 ntBASIC17.58■□□□□ 0.4
NKX3-1Q99801 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.58■□□□□ 0.4
NKX3-1Q99801 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.58■□□□□ 0.4
NKX3-1Q99801 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
NKX3-1Q99801 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms