Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 SOX15-203ENST00000570788 1093 ntBASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC21.07■□□□□ 0.96
CDK5RAP1Q96SZ6 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 AC006058.3-201ENST00000606217 1069 ntBASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CDK5RAP1Q96SZ6 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 KRT17P3-201ENST00000420566 1262 ntBASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CDK5RAP1Q96SZ6 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 AC008403.3-201ENST00000598924 454 ntBASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 FP700111.2-201ENST00000619190 1892 ntBASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 AC007225.1-201ENST00000566331 1836 ntBASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CDK5RAP1Q96SZ6 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CDK5RAP1Q96SZ6 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CDK5RAP1Q96SZ6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms