Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SKA1Q96BD8 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.73■□□□□ 0.91
SKA1Q96BD8 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.73■□□□□ 0.91
SKA1Q96BD8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SKA1Q96BD8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.73■□□□□ 0.91
SKA1Q96BD8 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 LSM12P1-201ENST00000411836 588 ntBASIC20.72■□□□□ 0.91
SKA1Q96BD8 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 CDV3P1-201ENST00000471403 739 ntBASIC20.72■□□□□ 0.91
SKA1Q96BD8 AC091874.3-201ENST00000512672 1195 ntBASIC20.72■□□□□ 0.91
SKA1Q96BD8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SKA1Q96BD8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.72■□□□□ 0.91
SKA1Q96BD8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 MYC-209ENST00000641252 345 ntBASIC20.71■□□□□ 0.91
SKA1Q96BD8 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 AC061975.6-201ENST00000579045 1553 ntBASIC20.71■□□□□ 0.91
SKA1Q96BD8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SKA1Q96BD8 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SKA1Q96BD8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
SKA1Q96BD8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.7■□□□□ 0.91
SKA1Q96BD8 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 AC245052.3-201ENST00000450182 901 ntBASIC20.7■□□□□ 0.9
SKA1Q96BD8 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 AP006294.2-201ENST00000641667 209 ntBASIC20.7■□□□□ 0.9
SKA1Q96BD8 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SKA1Q96BD8 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SKA1Q96BD8 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 DUSP5P2-201ENST00000426873 1033 ntBASIC20.69■□□□□ 0.9
SKA1Q96BD8 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 AC008687.6-201ENST00000596318 630 ntBASIC20.69■□□□□ 0.9
SKA1Q96BD8 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 AFG3L1P-217ENST00000557444 2447 ntBASIC20.69■□□□□ 0.9
SKA1Q96BD8 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms