Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 IER3-202ENST00000376377 1350 ntBASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 LINC01124-201ENST00000409786 2117 ntBASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 FAM207BP-201ENST00000447172 505 ntBASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 AC092068.2-201ENST00000590491 1708 ntBASIC24.21■■□□□ 1.47
SMC1BQ8NDV3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
SMC1BQ8NDV3 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
SMC1BQ8NDV3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 AL121956.5-201ENST00000625261 221 ntBASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
SMC1BQ8NDV3 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 ANOS2P-203ENST00000472227 1816 ntBASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 NIFKP9-201ENST00000419265 221 ntBASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 FAM86EP-206ENST00000510506 987 ntBASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SMC1BQ8NDV3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.18■■□□□ 1.46
SMC1BQ8NDV3 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 AC092647.4-201ENST00000457211 535 ntBASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 AP005242.2-201ENST00000580065 1175 ntBASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 AC139887.4-201ENST00000607877 719 ntBASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 FAM87A-204ENST00000613235 858 ntBASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
SMC1BQ8NDV3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMC1BQ8NDV3 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC24.15■■□□□ 1.46
SMC1BQ8NDV3 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms