Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SLC44A3Q8N4M1 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 RBM17P1-201ENST00000453646 1190 ntBASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 KRT8P9-201ENST00000558927 1449 ntBASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SLC44A3Q8N4M1 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AC079598.2-202ENST00000546624 1451 ntBASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AC005521.1-201ENST00000393351 872 ntBASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SLC44A3Q8N4M1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.83■□□□□ 0.93
SLC44A3Q8N4M1 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SLC44A3Q8N4M1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SLC44A3Q8N4M1 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SLC44A3Q8N4M1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SLC44A3Q8N4M1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 NUDT16P1-203ENST00000513809 620 ntBASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 AC023632.3-201ENST00000521633 145 ntBASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 AC124283.5-201ENST00000624661 1809 ntBASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SLC44A3Q8N4M1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 UNC93B2-201ENST00000285383 730 ntBASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.81■□□□□ 0.92
SLC44A3Q8N4M1 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms