Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AL355472.2-201ENST00000422958 438 ntBASIC23.83■■□□□ 1.41
SYNE3Q6ZMZ3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SYNE3Q6ZMZ3 LINC01006-201ENST00000333319 2292 ntBASIC23.83■■□□□ 1.41
SYNE3Q6ZMZ3 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.83■■□□□ 1.41
SYNE3Q6ZMZ3 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SYNE3Q6ZMZ3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 AC092720.2-201ENST00000602388 1665 ntBASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SYNE3Q6ZMZ3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
SYNE3Q6ZMZ3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 GPX1P1-201ENST00000388829 606 ntBASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 NCF1B-203ENST00000435988 1254 ntBASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 AL589743.5-201ENST00000616611 1050 ntBASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SYNE3Q6ZMZ3 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 AIRN-201ENST00000601203 4374 ntBASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SYNE3Q6ZMZ3 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 SLC29A4P1-201ENST00000398760 971 ntBASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 LSM12P1-201ENST00000411836 588 ntBASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 AC105020.6-201ENST00000621523 1217 ntBASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SYNE3Q6ZMZ3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SYNE3Q6ZMZ3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SYNE3Q6ZMZ3 AC073130.3-201ENST00000624389 2278 ntBASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms