Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 AL390955.1-201ENST00000428694 934 ntBASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CSPG4Q6UVK1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 AC006557.6-201ENST00000623071 864 ntBASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 AC079598.2-202ENST00000546624 1451 ntBASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 MMP23A-201ENST00000234610 1017 ntBASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
CSPG4Q6UVK1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 FAM197Y1-201ENST00000421178 764 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AL353807.1-201ENST00000427475 662 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 RBM17P1-201ENST00000453646 1190 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 NBPF21P-201ENST00000425093 1451 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AL031963.3-201ENST00000606441 850 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AC005363.2-201ENST00000618631 242 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 CYP2D8P-201ENST00000433633 1490 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 AC116050.2-201ENST00000612102 1779 ntBASIC16.75■□□□□ 0.27
CSPG4Q6UVK1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CSPG4Q6UVK1 LINC01568-207ENST00000641790 1380 ntBASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms