Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 AC100791.3-201ENST00000617619 330 ntBASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRIM40Q6P9F5 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 MCRIP2P1-201ENST00000394346 511 ntBASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 AC006970.2-201ENST00000450065 779 ntBASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRIM40Q6P9F5 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 AC087633.2-202ENST00000565166 1439 ntBASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM40Q6P9F5 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 CROCCP5-201ENST00000436658 830 ntBASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 AC133552.2-202ENST00000575694 574 ntBASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM40Q6P9F5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 AL512625.2-201ENST00000417533 625 ntBASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM40Q6P9F5 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 AF201337.1-201ENST00000520239 748 ntBASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 AL356652.1-201ENST00000615962 565 ntBASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 AL050303.2-201ENST00000619798 666 ntBASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 AL121603.2-201ENST00000557373 2117 ntBASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM40Q6P9F5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms