Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 BX664615.1-201ENST00000443558 458 ntBASIC14.64□□□□□ -0.07
COL7A1Q02388 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC14.64□□□□□ -0.07
COL7A1Q02388 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.64□□□□□ -0.07
COL7A1Q02388 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
COL7A1Q02388 TERT-206ENST00000508104 2486 ntTSL 5 BASIC14.64□□□□□ -0.07
COL7A1Q02388 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
COL7A1Q02388 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
COL7A1Q02388 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC14.63□□□□□ -0.07
COL7A1Q02388 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 AC026271.3-201ENST00000571884 352 ntBASIC14.63□□□□□ -0.07
COL7A1Q02388 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
COL7A1Q02388 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC14.63□□□□□ -0.07
COL7A1Q02388 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.63□□□□□ -0.07
COL7A1Q02388 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.63□□□□□ -0.07
COL7A1Q02388 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC14.63□□□□□ -0.07
COL7A1Q02388 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.63□□□□□ -0.07
COL7A1Q02388 AL356652.1-201ENST00000615962 565 ntBASIC14.63□□□□□ -0.07
COL7A1Q02388 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC14.63□□□□□ -0.07
COL7A1Q02388 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC14.63□□□□□ -0.07
COL7A1Q02388 HTR7P1-201ENST00000538670 1336 ntBASIC14.63□□□□□ -0.07
COL7A1Q02388 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
COL7A1Q02388 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC14.62□□□□□ -0.07
COL7A1Q02388 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC14.62□□□□□ -0.07
COL7A1Q02388 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC14.62□□□□□ -0.07
COL7A1Q02388 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
COL7A1Q02388 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC14.62□□□□□ -0.07
COL7A1Q02388 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
COL7A1Q02388 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC14.62□□□□□ -0.07
COL7A1Q02388 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL7A1Q02388 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.62□□□□□ -0.07
COL7A1Q02388 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL7A1Q02388 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC14.61□□□□□ -0.07
COL7A1Q02388 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC14.61□□□□□ -0.07
COL7A1Q02388 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.61□□□□□ -0.07
COL7A1Q02388 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 AL450487.1-201ENST00000426799 995 ntBASIC14.61□□□□□ -0.07
COL7A1Q02388 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC14.61□□□□□ -0.07
COL7A1Q02388 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL7A1Q02388 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
COL7A1Q02388 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.6□□□□□ -0.07
COL7A1Q02388 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC14.6□□□□□ -0.07
COL7A1Q02388 MED25-212ENST00000618715 1467 ntTSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL7A1Q02388 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC14.6□□□□□ -0.07
COL7A1Q02388 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms