Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
H3F3AP84243 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 AC020907.5-201ENST00000624372 1936 ntBASIC18.13■□□□□ 0.49
H3F3AP84243 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
H3F3AP84243 AC092720.2-201ENST00000602388 1665 ntBASIC18.13■□□□□ 0.49
H3F3AP84243 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.13■□□□□ 0.49
H3F3AP84243 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 HLA-L-209ENST00000420110 1011 ntBASIC18.13■□□□□ 0.49
H3F3AP84243 AC073210.2-201ENST00000430369 194 ntBASIC18.13■□□□□ 0.49
H3F3AP84243 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.13■□□□□ 0.49
H3F3AP84243 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.13■□□□□ 0.49
H3F3AP84243 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.13■□□□□ 0.49
H3F3AP84243 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
H3F3AP84243 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 GABARAPL3-202ENST00000624044 1851 ntBASIC18.13■□□□□ 0.49
H3F3AP84243 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
H3F3AP84243 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.13■□□□□ 0.49
H3F3AP84243 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
H3F3AP84243 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 MIR4758-201ENST00000577688 71 ntBASIC18.12■□□□□ 0.49
H3F3AP84243 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.12■□□□□ 0.49
H3F3AP84243 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.12■□□□□ 0.49
H3F3AP84243 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.12■□□□□ 0.49
H3F3AP84243 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
H3F3AP84243 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
H3F3AP84243 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
H3F3AP84243 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.11■□□□□ 0.49
H3F3AP84243 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
H3F3AP84243 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
H3F3AP84243 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
H3F3AP84243 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.11■□□□□ 0.49
H3F3AP84243 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.11■□□□□ 0.49
H3F3AP84243 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
H3F3AP84243 AL157384.1-201ENST00000445995 2473 ntBASIC18.11■□□□□ 0.49
H3F3AP84243 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
H3F3AP84243 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.1■□□□□ 0.49
H3F3AP84243 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.1■□□□□ 0.49
H3F3AP84243 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 AL138781.1-201ENST00000566567 1274 ntBASIC18.1■□□□□ 0.49
H3F3AP84243 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.1■□□□□ 0.49
H3F3AP84243 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
H3F3AP84243 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
H3F3AP84243 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
H3F3AP84243 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.09■□□□□ 0.49
H3F3AP84243 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.09■□□□□ 0.49
H3F3AP84243 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
H3F3AP84243 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
H3F3AP84243 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms