Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VCPP55072 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.67■■□□□ 1.06
VCPP55072 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.67■■□□□ 1.06
VCPP55072 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.67■■□□□ 1.06
VCPP55072 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.67■■□□□ 1.06
VCPP55072 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 BX088651.1-201ENST00000540551 451 ntBASIC21.67■■□□□ 1.06
VCPP55072 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
VCPP55072 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.67■■□□□ 1.06
VCPP55072 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.67■■□□□ 1.06
VCPP55072 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VCPP55072 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
VCPP55072 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
VCPP55072 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
VCPP55072 KRT16P2-201ENST00000414673 1423 ntBASIC21.66■■□□□ 1.06
VCPP55072 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.66■■□□□ 1.06
VCPP55072 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
VCPP55072 CYP2T3P-201ENST00000601990 817 ntBASIC21.66■■□□□ 1.06
VCPP55072 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.66■■□□□ 1.06
VCPP55072 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.66■■□□□ 1.06
VCPP55072 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
VCPP55072 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.66■■□□□ 1.06
VCPP55072 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
VCPP55072 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.65■■□□□ 1.06
VCPP55072 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 LINC01521-201ENST00000504184 1943 ntBASIC21.65■■□□□ 1.06
VCPP55072 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.65■■□□□ 1.06
VCPP55072 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.65■■□□□ 1.06
VCPP55072 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.65■■□□□ 1.06
VCPP55072 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.65■■□□□ 1.06
VCPP55072 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 AC073130.3-201ENST00000624389 2278 ntBASIC21.65■■□□□ 1.06
VCPP55072 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
VCPP55072 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.65■■□□□ 1.06
VCPP55072 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
VCPP55072 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.64■■□□□ 1.06
VCPP55072 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
VCPP55072 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
VCPP55072 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.64■■□□□ 1.06
VCPP55072 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
VCPP55072 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC21.64■■□□□ 1.05
VCPP55072 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.64■■□□□ 1.05
VCPP55072 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.64■■□□□ 1.05
VCPP55072 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
VCPP55072 RBM17P2-201ENST00000616397 1405 ntBASIC21.63■■□□□ 1.05
VCPP55072 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
VCPP55072 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
VCPP55072 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
VCPP55072 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.63■■□□□ 1.05
VCPP55072 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.63■■□□□ 1.05
VCPP55072 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.63■■□□□ 1.05
VCPP55072 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
VCPP55072 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
VCPP55072 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms