Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.99■□□□□ 0.63
RFX3P48380 AL591742.1-201ENST00000604433 565 ntBASIC18.99■□□□□ 0.63
RFX3P48380 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.99■□□□□ 0.63
RFX3P48380 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
RFX3P48380 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.99■□□□□ 0.63
RFX3P48380 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX3P48380 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 HCG11-201ENST00000411553 5696 ntBASIC18.99■□□□□ 0.63
RFX3P48380 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
RFX3P48380 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
RFX3P48380 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 LINC01006-201ENST00000333319 2292 ntBASIC18.98■□□□□ 0.63
RFX3P48380 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.98■□□□□ 0.63
RFX3P48380 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.98■□□□□ 0.63
RFX3P48380 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 AC080038.1-201ENST00000611274 1154 ntBASIC18.98■□□□□ 0.63
RFX3P48380 AC092666.2-201ENST00000613287 246 ntBASIC18.98■□□□□ 0.63
RFX3P48380 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
RFX3P48380 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RFX3P48380 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
RFX3P48380 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RFX3P48380 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 AC007322.1-201ENST00000426983 750 ntBASIC18.97■□□□□ 0.63
RFX3P48380 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX3P48380 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX3P48380 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX3P48380 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.97■□□□□ 0.63
RFX3P48380 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX3P48380 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.97■□□□□ 0.63
RFX3P48380 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RFX3P48380 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 FEM1AP1-201ENST00000431297 1995 ntBASIC18.96■□□□□ 0.63
RFX3P48380 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 CNN2P6-201ENST00000439038 900 ntBASIC18.96■□□□□ 0.63
RFX3P48380 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC18.96■□□□□ 0.63
RFX3P48380 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 AC016405.3-201ENST00000607710 860 ntBASIC18.96■□□□□ 0.63
RFX3P48380 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
RFX3P48380 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RFX3P48380 AC027702.1-201ENST00000563810 1770 ntBASIC18.96■□□□□ 0.63
RFX3P48380 AC073314.1-201ENST00000568729 2216 ntBASIC18.96■□□□□ 0.63
RFX3P48380 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX3P48380 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX3P48380 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX3P48380 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms