Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.31■□□□□ 0.68
SDC1P18827 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 MIR6821-201ENST00000617625 74 ntBASIC19.31■□□□□ 0.68
SDC1P18827 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.31■□□□□ 0.68
SDC1P18827 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SDC1P18827 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC1P18827 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.3■□□□□ 0.68
SDC1P18827 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SDC1P18827 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SDC1P18827 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.3■□□□□ 0.68
SDC1P18827 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.3■□□□□ 0.68
SDC1P18827 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC1P18827 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SDC1P18827 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC1P18827 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
SDC1P18827 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.3■□□□□ 0.68
SDC1P18827 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SDC1P18827 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC1P18827 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 AC087633.2-202ENST00000565166 1439 ntBASIC19.29■□□□□ 0.68
SDC1P18827 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.29■□□□□ 0.68
SDC1P18827 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SDC1P18827 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 AL591742.1-201ENST00000604433 565 ntBASIC19.29■□□□□ 0.68
SDC1P18827 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC1P18827 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SDC1P18827 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.29■□□□□ 0.68
SDC1P18827 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SDC1P18827 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SDC1P18827 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.28■□□□□ 0.68
SDC1P18827 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SDC1P18827 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC1P18827 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.28■□□□□ 0.68
SDC1P18827 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SDC1P18827 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.27■□□□□ 0.68
SDC1P18827 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.27■□□□□ 0.68
SDC1P18827 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.27■□□□□ 0.68
SDC1P18827 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.27■□□□□ 0.68
SDC1P18827 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.27■□□□□ 0.68
SDC1P18827 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.27■□□□□ 0.68
SDC1P18827 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 AL356652.1-201ENST00000615962 565 ntBASIC19.27■□□□□ 0.68
SDC1P18827 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SDC1P18827 CYP21A1P-202ENST00000354927 1481 ntBASIC19.27■□□□□ 0.67
SDC1P18827 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SDC1P18827 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
SDC1P18827 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
SDC1P18827 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
SDC1P18827 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC1P18827 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms