Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
LIMS4P0CW20 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18■□□□□ 0.47
LIMS4P0CW20 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18■□□□□ 0.47
LIMS4P0CW20 TREX1-205ENST00000625293 1783 ntBASIC18■□□□□ 0.47
LIMS4P0CW20 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18■□□□□ 0.47
LIMS4P0CW20 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18■□□□□ 0.47
LIMS4P0CW20 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18■□□□□ 0.47
LIMS4P0CW20 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
LIMS4P0CW20 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18■□□□□ 0.47
LIMS4P0CW20 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18■□□□□ 0.47
LIMS4P0CW20 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
LIMS4P0CW20 DPP3P2-201ENST00000416030 1696 ntBASIC17.99■□□□□ 0.47
LIMS4P0CW20 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 TPRG1LP1-201ENST00000598702 760 ntBASIC17.99■□□□□ 0.47
LIMS4P0CW20 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 BX119927.1-201ENST00000636596 1552 ntBASIC17.99■□□□□ 0.47
LIMS4P0CW20 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
LIMS4P0CW20 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
LIMS4P0CW20 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 AC012414.1-201ENST00000556676 535 ntBASIC17.98■□□□□ 0.47
LIMS4P0CW20 AC027682.1-201ENST00000562846 899 ntBASIC17.98■□□□□ 0.47
LIMS4P0CW20 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC17.98■□□□□ 0.47
LIMS4P0CW20 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
LIMS4P0CW20 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 KRT8P36-201ENST00000489121 1440 ntBASIC17.97■□□□□ 0.47
LIMS4P0CW20 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
LIMS4P0CW20 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.97■□□□□ 0.47
LIMS4P0CW20 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LIMS4P0CW20 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
LIMS4P0CW20 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMS4P0CW20 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LIMS4P0CW20 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms