Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
CNOT4O95628 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.98■□□□□ 0.47
CNOT4O95628 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.98■□□□□ 0.47
CNOT4O95628 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CNOT4O95628 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
CNOT4O95628 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CNOT4O95628 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.98■□□□□ 0.47
CNOT4O95628 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CNOT4O95628 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.97■□□□□ 0.47
CNOT4O95628 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CNOT4O95628 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.97■□□□□ 0.47
CNOT4O95628 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
CNOT4O95628 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.97■□□□□ 0.47
CNOT4O95628 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CNOT4O95628 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CNOT4O95628 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CNOT4O95628 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CNOT4O95628 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CNOT4O95628 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC17.96■□□□□ 0.47
CNOT4O95628 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.96■□□□□ 0.47
CNOT4O95628 AC083880.1-201ENST00000608266 535 ntBASIC17.96■□□□□ 0.47
CNOT4O95628 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.96■□□□□ 0.47
CNOT4O95628 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
CNOT4O95628 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CNOT4O95628 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.95■□□□□ 0.46
CNOT4O95628 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.95■□□□□ 0.46
CNOT4O95628 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.95■□□□□ 0.46
CNOT4O95628 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.95■□□□□ 0.46
CNOT4O95628 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.95■□□□□ 0.46
CNOT4O95628 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.95■□□□□ 0.46
CNOT4O95628 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CNOT4O95628 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.95■□□□□ 0.46
CNOT4O95628 MIR2861-201ENST00000636310 90 ntBASIC17.95■□□□□ 0.46
CNOT4O95628 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
CNOT4O95628 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.95■□□□□ 0.46
CNOT4O95628 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.95■□□□□ 0.46
CNOT4O95628 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.95■□□□□ 0.46
CNOT4O95628 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CNOT4O95628 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CNOT4O95628 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.94■□□□□ 0.46
CNOT4O95628 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CNOT4O95628 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.94■□□□□ 0.46
CNOT4O95628 AC026310.3-201ENST00000625186 2373 ntBASIC17.94■□□□□ 0.46
CNOT4O95628 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNOT4O95628 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.94■□□□□ 0.46
CNOT4O95628 HLA-B-256ENST00000639848 1089 ntBASIC17.94■□□□□ 0.46
CNOT4O95628 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CNOT4O95628 ERF-202ENST00000440177 2032 ntTSL 2 BASIC17.94■□□□□ 0.46
CNOT4O95628 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CNOT4O95628 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CNOT4O95628 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms