Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS4BO75351 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
VPS4BO75351 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VPS4BO75351 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS4BO75351 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS4BO75351 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS4BO75351 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS4BO75351 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS4BO75351 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
VPS4BO75351 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS4BO75351 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS4BO75351 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VPS4BO75351 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS4BO75351 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 AL391422.3-201ENST00000603791 2761 ntBASIC19.81■□□□□ 0.76
VPS4BO75351 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VPS4BO75351 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 SLC29A4P1-201ENST00000398760 971 ntBASIC19.81■□□□□ 0.76
VPS4BO75351 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS4BO75351 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS4BO75351 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS4BO75351 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS4BO75351 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS4BO75351 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS4BO75351 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4BO75351 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4BO75351 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4BO75351 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS4BO75351 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
VPS4BO75351 TSPY6P-201ENST00000448518 926 ntBASIC19.8■□□□□ 0.76
VPS4BO75351 AC245052.3-201ENST00000450182 901 ntBASIC19.8■□□□□ 0.76
VPS4BO75351 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS4BO75351 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS4BO75351 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS4BO75351 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4BO75351 KRT16P2-201ENST00000414673 1423 ntBASIC19.79■□□□□ 0.76
VPS4BO75351 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS4BO75351 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS4BO75351 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4BO75351 AC079140.4-201ENST00000507448 529 ntBASIC19.79■□□□□ 0.76
VPS4BO75351 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS4BO75351 AC231657.2-201ENST00000624556 255 ntBASIC19.79■□□□□ 0.76
VPS4BO75351 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS4BO75351 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS4BO75351 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS4BO75351 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
VPS4BO75351 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS4BO75351 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4BO75351 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS4BO75351 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4BO75351 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
VPS4BO75351 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
VPS4BO75351 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS4BO75351 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS4BO75351 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4BO75351 AC093827.2-201ENST00000512654 315 ntBASIC19.78■□□□□ 0.76
VPS4BO75351 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS4BO75351 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS4BO75351 AC120498.10-201ENST00000621827 505 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms