Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SGCEO43556 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SGCEO43556 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC17.87■□□□□ 0.45
SGCEO43556 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC17.87■□□□□ 0.45
SGCEO43556 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.87■□□□□ 0.45
SGCEO43556 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SGCEO43556 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.86■□□□□ 0.45
SGCEO43556 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SGCEO43556 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.86■□□□□ 0.45
SGCEO43556 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.86■□□□□ 0.45
SGCEO43556 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.86■□□□□ 0.45
SGCEO43556 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.86■□□□□ 0.45
SGCEO43556 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.86■□□□□ 0.45
SGCEO43556 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.86■□□□□ 0.45
SGCEO43556 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.86■□□□□ 0.45
SGCEO43556 AC020907.5-201ENST00000624372 1936 ntBASIC17.86■□□□□ 0.45
SGCEO43556 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SGCEO43556 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.86■□□□□ 0.45
SGCEO43556 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.86■□□□□ 0.45
SGCEO43556 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
SGCEO43556 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.85■□□□□ 0.45
SGCEO43556 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SGCEO43556 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.85■□□□□ 0.45
SGCEO43556 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.85■□□□□ 0.45
SGCEO43556 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.85■□□□□ 0.45
SGCEO43556 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.85■□□□□ 0.45
SGCEO43556 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.85■□□□□ 0.45
SGCEO43556 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.85■□□□□ 0.45
SGCEO43556 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.85■□□□□ 0.45
SGCEO43556 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SGCEO43556 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SGCEO43556 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
SGCEO43556 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SGCEO43556 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 AC092720.2-201ENST00000602388 1665 ntBASIC17.84■□□□□ 0.45
SGCEO43556 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.84■□□□□ 0.45
SGCEO43556 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SGCEO43556 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 CNN2P6-201ENST00000439038 900 ntBASIC17.84■□□□□ 0.45
SGCEO43556 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.84■□□□□ 0.45
SGCEO43556 AC231657.2-201ENST00000624556 255 ntBASIC17.84■□□□□ 0.45
SGCEO43556 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
SGCEO43556 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
SGCEO43556 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.84■□□□□ 0.45
SGCEO43556 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SGCEO43556 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
SGCEO43556 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.83■□□□□ 0.45
SGCEO43556 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SGCEO43556 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.83■□□□□ 0.45
SGCEO43556 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SGCEO43556 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SGCEO43556 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.83■□□□□ 0.44
SGCEO43556 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SGCEO43556 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SGCEO43556 PGM5P4-201ENST00000421970 445 ntBASIC17.83■□□□□ 0.44
SGCEO43556 AC007322.1-201ENST00000426983 750 ntBASIC17.83■□□□□ 0.44
SGCEO43556 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms