Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 HLA-J-203ENST00000494367 1087 ntBASIC19.33■□□□□ 0.68
CACNA1AO00555 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.33■□□□□ 0.68
CACNA1AO00555 CR392000.1-201ENST00000624770 1228 ntBASIC19.33■□□□□ 0.68
CACNA1AO00555 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
CACNA1AO00555 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CACNA1AO00555 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.33■□□□□ 0.68
CACNA1AO00555 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CACNA1AO00555 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.32■□□□□ 0.68
CACNA1AO00555 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 PMS2P1-201ENST00000431037 1228 ntBASIC19.32■□□□□ 0.68
CACNA1AO00555 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.32■□□□□ 0.68
CACNA1AO00555 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.32■□□□□ 0.68
CACNA1AO00555 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.32■□□□□ 0.68
CACNA1AO00555 MIR3652-201ENST00000579335 131 ntBASIC19.32■□□□□ 0.68
CACNA1AO00555 AC104692.2-201ENST00000603054 253 ntBASIC19.32■□□□□ 0.68
CACNA1AO00555 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.32■□□□□ 0.68
CACNA1AO00555 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.32■□□□□ 0.68
CACNA1AO00555 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CACNA1AO00555 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.32■□□□□ 0.68
CACNA1AO00555 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
CACNA1AO00555 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.32■□□□□ 0.68
CACNA1AO00555 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CACNA1AO00555 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.32■□□□□ 0.68
CACNA1AO00555 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.32■□□□□ 0.68
CACNA1AO00555 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CACNA1AO00555 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CACNA1AO00555 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.31■□□□□ 0.68
CACNA1AO00555 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 B3GAT3P1-201ENST00000471720 806 ntBASIC19.31■□□□□ 0.68
CACNA1AO00555 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.31■□□□□ 0.68
CACNA1AO00555 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.31■□□□□ 0.68
CACNA1AO00555 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.31■□□□□ 0.68
CACNA1AO00555 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.31■□□□□ 0.68
CACNA1AO00555 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.31■□□□□ 0.68
CACNA1AO00555 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.31■□□□□ 0.68
CACNA1AO00555 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CACNA1AO00555 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.3■□□□□ 0.68
CACNA1AO00555 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.3■□□□□ 0.68
CACNA1AO00555 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC19.3■□□□□ 0.68
CACNA1AO00555 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1AO00555 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 AC004870.1-201ENST00000315132 882 ntBASIC19.3■□□□□ 0.68
CACNA1AO00555 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CACNA1AO00555 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 VENTXP5-201ENST00000523979 775 ntBASIC19.3■□□□□ 0.68
CACNA1AO00555 AL445675.2-201ENST00000620291 557 ntBASIC19.3■□□□□ 0.68
CACNA1AO00555 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CACNA1AO00555 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.3■□□□□ 0.68
CACNA1AO00555 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CACNA1AO00555 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.29■□□□□ 0.68
CACNA1AO00555 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1AO00555 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CACNA1AO00555 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1AO00555 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.29■□□□□ 0.68
CACNA1AO00555 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.29■□□□□ 0.68
CACNA1AO00555 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.29■□□□□ 0.68
CACNA1AO00555 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.29■□□□□ 0.68
CACNA1AO00555 AL136038.3-201ENST00000561909 1096 ntBASIC19.29■□□□□ 0.68
CACNA1AO00555 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
CACNA1AO00555 AC083849.1-201ENST00000615227 514 ntBASIC19.29■□□□□ 0.68
CACNA1AO00555 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CACNA1AO00555 AC003102.1-202ENST00000563394 1796 ntBASIC19.29■□□□□ 0.68
CACNA1AO00555 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.28■□□□□ 0.68
CACNA1AO00555 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.28■□□□□ 0.68
CACNA1AO00555 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CACNA1AO00555 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms