Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 PGM5P4-201ENST00000421970 445 ntBASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 AL356652.1-201ENST00000615962 565 ntBASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL6A6A6NMZ7 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC116050.2-201ENST00000612102 1779 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 NIFKP9-201ENST00000419265 221 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 KRT16P1-201ENST00000399124 1418 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC026271.3-201ENST00000571884 352 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AL121906.2-201ENST00000621597 723 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 AC068473.5-201ENST00000616428 2072 ntBASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.37■□□□□ 0.53
COL6A6A6NMZ7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 AC117947.1-201ENST00000427448 529 ntBASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 GPALPP1-207ENST00000611650 899 ntBASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL6A6A6NMZ7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 BX664615.1-201ENST00000443558 458 ntBASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 ECEL1P2-202ENST00000465689 757 ntBASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 KRT8P10-201ENST00000450021 1447 ntBASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 FAM207BP-201ENST00000447172 505 ntBASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.35■□□□□ 0.53
COL6A6A6NMZ7 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 AL121956.5-201ENST00000625261 221 ntBASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 RNF152P1-201ENST00000397754 604 ntBASIC18.34■□□□□ 0.53
COL6A6A6NMZ7 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms