Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 KRT8P36-201ENST00000489121 1440 ntBASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 DPP3P2-201ENST00000416030 1696 ntBASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRAV3A0A0B4J244 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 SLC7A5P1-201ENST00000568957 537 ntBASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 UBE2DNL-204ENST00000602536 740 ntBASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRAV3A0A0B4J244 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 GALNS-213ENST00000569433 723 ntTSL 3 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.28■□□□□ 0.2
TRAV3A0A0B4J244 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 AC125437.2-201ENST00000625180 2167 ntBASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.27■□□□□ 0.2
TRAV3A0A0B4J244 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.27■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms