Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 AL162412.1-201ENST00000567129 965 ntBASIC21.15■□□□□ 0.98
DDX56Q9NY93 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
DDX56Q9NY93 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.15■□□□□ 0.98
DDX56Q9NY93 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.98
DDX56Q9NY93 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.98
DDX56Q9NY93 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX56Q9NY93 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
DDX56Q9NY93 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX56Q9NY93 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.14■□□□□ 0.98
DDX56Q9NY93 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
DDX56Q9NY93 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
DDX56Q9NY93 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 AC007322.4-201ENST00000509611 723 ntBASIC21.14■□□□□ 0.97
DDX56Q9NY93 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 SMG8-203ENST00000578922 2178 ntBASIC21.14■□□□□ 0.97
DDX56Q9NY93 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
DDX56Q9NY93 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
DDX56Q9NY93 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX56Q9NY93 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX56Q9NY93 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 AC013268.1-206ENST00000638368 961 ntBASIC21.13■□□□□ 0.97
DDX56Q9NY93 AC112229.1-201ENST00000639295 961 ntBASIC21.13■□□□□ 0.97
DDX56Q9NY93 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX56Q9NY93 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
DDX56Q9NY93 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
DDX56Q9NY93 AC087633.2-202ENST00000565166 1439 ntBASIC21.12■□□□□ 0.97
DDX56Q9NY93 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.12■□□□□ 0.97
DDX56Q9NY93 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 AC137761.2-201ENST00000561729 223 ntBASIC21.12■□□□□ 0.97
DDX56Q9NY93 AC145350.3-201ENST00000569033 163 ntBASIC21.12■□□□□ 0.97
DDX56Q9NY93 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX56Q9NY93 DPP3P2-201ENST00000416030 1696 ntBASIC21.12■□□□□ 0.97
DDX56Q9NY93 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
DDX56Q9NY93 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 AC112907.3-201ENST00000577781 2400 ntBASIC21.11■□□□□ 0.97
DDX56Q9NY93 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms