Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
VPS11Q9H270 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
VPS11Q9H270 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS11Q9H270 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.39■□□□□ 0.85
VPS11Q9H270 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
VPS11Q9H270 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
VPS11Q9H270 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.39■□□□□ 0.85
VPS11Q9H270 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS11Q9H270 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 AC245052.3-201ENST00000450182 901 ntBASIC20.38■□□□□ 0.85
VPS11Q9H270 AC142381.2-201ENST00000566120 298 ntBASIC20.38■□□□□ 0.85
VPS11Q9H270 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS11Q9H270 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS11Q9H270 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
VPS11Q9H270 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.38■□□□□ 0.85
VPS11Q9H270 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.37■□□□□ 0.85
VPS11Q9H270 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
VPS11Q9H270 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS11Q9H270 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 AL020996.1-203ENST00000536896 2307 ntBASIC20.37■□□□□ 0.85
VPS11Q9H270 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
VPS11Q9H270 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS11Q9H270 AC138907.5-202ENST00000569484 235 ntBASIC20.37■□□□□ 0.85
VPS11Q9H270 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS11Q9H270 AL139246.5-201ENST00000606645 996 ntBASIC20.37■□□□□ 0.85
VPS11Q9H270 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS11Q9H270 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS11Q9H270 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS11Q9H270 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS11Q9H270 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
VPS11Q9H270 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
VPS11Q9H270 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS11Q9H270 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS11Q9H270 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
VPS11Q9H270 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS11Q9H270 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 AC120498.10-201ENST00000621827 505 ntBASIC20.36■□□□□ 0.85
VPS11Q9H270 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS11Q9H270 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS11Q9H270 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
VPS11Q9H270 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
VPS11Q9H270 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS11Q9H270 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 KRT16P2-201ENST00000414673 1423 ntBASIC20.36■□□□□ 0.85
VPS11Q9H270 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS11Q9H270 AC116562.4-201ENST00000641316 2276 ntBASIC20.36■□□□□ 0.85
VPS11Q9H270 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS11Q9H270 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.35■□□□□ 0.85
VPS11Q9H270 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VPS11Q9H270 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VPS11Q9H270 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS11Q9H270 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS11Q9H270 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.35■□□□□ 0.85
VPS11Q9H270 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
VPS11Q9H270 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
VPS11Q9H270 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
VPS11Q9H270 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS11Q9H270 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS11Q9H270 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS11Q9H270 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS11Q9H270 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms