Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.62■□□□□ 0.57
TIMP4Q99727 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.62■□□□□ 0.57
TIMP4Q99727 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.62■□□□□ 0.57
TIMP4Q99727 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.62■□□□□ 0.57
TIMP4Q99727 AC100791.3-201ENST00000617619 330 ntBASIC18.62■□□□□ 0.57
TIMP4Q99727 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.62■□□□□ 0.57
TIMP4Q99727 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.62■□□□□ 0.57
TIMP4Q99727 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
TIMP4Q99727 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.62■□□□□ 0.57
TIMP4Q99727 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC18.62■□□□□ 0.57
TIMP4Q99727 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TIMP4Q99727 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.61■□□□□ 0.57
TIMP4Q99727 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TIMP4Q99727 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 AC007322.3-201ENST00000426526 701 ntBASIC18.61■□□□□ 0.57
TIMP4Q99727 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.61■□□□□ 0.57
TIMP4Q99727 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.61■□□□□ 0.57
TIMP4Q99727 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC18.61■□□□□ 0.57
TIMP4Q99727 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.61■□□□□ 0.57
TIMP4Q99727 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
TIMP4Q99727 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TIMP4Q99727 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TIMP4Q99727 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.6■□□□□ 0.57
TIMP4Q99727 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.6■□□□□ 0.57
TIMP4Q99727 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TIMP4Q99727 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 ABHD17AP1-201ENST00000358206 933 ntBASIC18.6■□□□□ 0.57
TIMP4Q99727 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.6■□□□□ 0.57
TIMP4Q99727 AC097658.1-201ENST00000475555 843 ntBASIC18.6■□□□□ 0.57
TIMP4Q99727 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.6■□□□□ 0.57
TIMP4Q99727 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.6■□□□□ 0.57
TIMP4Q99727 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TIMP4Q99727 AL391422.3-201ENST00000603791 2761 ntBASIC18.6■□□□□ 0.57
TIMP4Q99727 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.6■□□□□ 0.57
TIMP4Q99727 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.6■□□□□ 0.57
TIMP4Q99727 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TIMP4Q99727 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
TIMP4Q99727 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.59■□□□□ 0.57
TIMP4Q99727 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
TIMP4Q99727 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.59■□□□□ 0.57
TIMP4Q99727 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 LSM12P1-201ENST00000411836 588 ntBASIC18.59■□□□□ 0.57
TIMP4Q99727 AL355472.2-201ENST00000422958 438 ntBASIC18.59■□□□□ 0.57
TIMP4Q99727 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.59■□□□□ 0.57
TIMP4Q99727 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
TIMP4Q99727 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TIMP4Q99727 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.59■□□□□ 0.57
TIMP4Q99727 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.59■□□□□ 0.57
TIMP4Q99727 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.59■□□□□ 0.57
TIMP4Q99727 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.59■□□□□ 0.57
TIMP4Q99727 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TIMP4Q99727 AC027702.1-201ENST00000563810 1770 ntBASIC18.59■□□□□ 0.57
TIMP4Q99727 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TIMP4Q99727 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TIMP4Q99727 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.58■□□□□ 0.57
TIMP4Q99727 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
TIMP4Q99727 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TIMP4Q99727 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.58■□□□□ 0.57
TIMP4Q99727 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
TIMP4Q99727 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.58■□□□□ 0.56
TIMP4Q99727 TSPY20P-201ENST00000450910 630 ntBASIC18.58■□□□□ 0.56
TIMP4Q99727 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.58■□□□□ 0.56
TIMP4Q99727 AC091874.3-201ENST00000512672 1195 ntBASIC18.58■□□□□ 0.56
TIMP4Q99727 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.58■□□□□ 0.56
TIMP4Q99727 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms