Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 PCDHAC2-203ENST00000615316 3011 ntBASIC19.77■□□□□ 0.76
VPS50Q96JG6 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 AC104771.1-201ENST00000603335 964 ntBASIC19.77■□□□□ 0.76
VPS50Q96JG6 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS50Q96JG6 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS50Q96JG6 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
VPS50Q96JG6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.77■□□□□ 0.75
VPS50Q96JG6 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.77■□□□□ 0.75
VPS50Q96JG6 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 SLC29A4P1-201ENST00000398760 971 ntBASIC19.76■□□□□ 0.75
VPS50Q96JG6 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS50Q96JG6 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS50Q96JG6 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.75■□□□□ 0.75
VPS50Q96JG6 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 AL020996.1-203ENST00000536896 2307 ntBASIC19.75■□□□□ 0.75
VPS50Q96JG6 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 GABARAPL3-202ENST00000624044 1851 ntBASIC19.75■□□□□ 0.75
VPS50Q96JG6 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS50Q96JG6 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS50Q96JG6 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 TERF1P5-201ENST00000477545 1207 ntBASIC19.74■□□□□ 0.75
VPS50Q96JG6 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 KRT16P2-201ENST00000414673 1423 ntBASIC19.74■□□□□ 0.75
VPS50Q96JG6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS50Q96JG6 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS50Q96JG6 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms