Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.77■□□□□ 0.92
SHROOM3Q8TF72 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SHROOM3Q8TF72 AL512408.1-201ENST00000569378 2000 ntBASIC20.77■□□□□ 0.91
SHROOM3Q8TF72 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 BX276092.2-201ENST00000417668 665 ntBASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 AC100791.3-201ENST00000617619 330 ntBASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 SLC29A4P1-201ENST00000398760 971 ntBASIC20.76■□□□□ 0.91
SHROOM3Q8TF72 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 AL512625.2-201ENST00000417533 625 ntBASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 AC093787.1-201ENST00000450396 207 ntBASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 AC008694.1-202ENST00000636953 945 ntBASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 PTBP1P-201ENST00000554374 1601 ntBASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.75■□□□□ 0.91
SHROOM3Q8TF72 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 AC092720.2-201ENST00000602388 1665 ntBASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
SHROOM3Q8TF72 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 AC073130.3-201ENST00000624389 2278 ntBASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 AC020907.5-201ENST00000624372 1936 ntBASIC20.73■□□□□ 0.91
SHROOM3Q8TF72 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 AC105036.2-201ENST00000569468 176 ntBASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SHROOM3Q8TF72 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.71■□□□□ 0.91
SHROOM3Q8TF72 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms