Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 AC133561.1-201ENST00000568600 2415 ntBASIC19.85■□□□□ 0.77
LMX1AQ8TE12 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
LMX1AQ8TE12 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LMX1AQ8TE12 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 AC027702.1-201ENST00000563810 1770 ntBASIC19.83■□□□□ 0.77
LMX1AQ8TE12 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 AC239809.2-201ENST00000415381 517 ntBASIC19.83■□□□□ 0.77
LMX1AQ8TE12 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
LMX1AQ8TE12 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LMX1AQ8TE12 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 MIR4497-201ENST00000583208 89 ntBASIC19.82■□□□□ 0.76
LMX1AQ8TE12 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 AC012676.1-201ENST00000574705 1949 ntBASIC19.82■□□□□ 0.76
LMX1AQ8TE12 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
LMX1AQ8TE12 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 KRASP1-201ENST00000407852 552 ntBASIC19.81■□□□□ 0.76
LMX1AQ8TE12 SNORA78-201ENST00000459373 127 ntBASIC19.81■□□□□ 0.76
LMX1AQ8TE12 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 AC124016.1-201ENST00000609552 612 ntBASIC19.81■□□□□ 0.76
LMX1AQ8TE12 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.81■□□□□ 0.76
LMX1AQ8TE12 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms