Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 AC117947.1-201ENST00000427448 529 ntBASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 GPALPP1-207ENST00000611650 899 ntBASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 AC093458.2-201ENST00000623150 629 ntBASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SMC1BQ8NDV3 ABCB10P4-201ENST00000566803 2184 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AC137767.1-201ENST00000602918 1920 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 PGM5P4-201ENST00000421970 445 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AC091390.4-202ENST00000476426 537 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 CLEC4GP1-201ENST00000596555 870 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 AC116050.2-201ENST00000612102 1779 ntBASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
SMC1BQ8NDV3 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 PCED1CP-201ENST00000419887 785 ntBASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 KSR1P1-201ENST00000446298 240 ntBASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.25■■□□□ 1.47
SMC1BQ8NDV3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 HCG4P8-203ENST00000443049 980 ntBASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SMC1BQ8NDV3 TSPY14P-201ENST00000303979 915 ntBASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 RNF152P1-201ENST00000397754 604 ntBASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 GRAMD4P8-201ENST00000605465 1115 ntBASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SMC1BQ8NDV3 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 KRT16P1-201ENST00000399124 1418 ntBASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 AC128688.1-201ENST00000487626 519 ntBASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC24.22■■□□□ 1.47
SMC1BQ8NDV3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms