Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.74■□□□□ 0.59
ZNF540Q8NDQ6 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 AC087623.3-201ENST00000607047 1098 ntBASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 AL358852.1-201ENST00000623174 1268 ntBASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 TSPY26P-201ENST00000476365 1326 ntBASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ZNF540Q8NDQ6 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ZNF540Q8NDQ6 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 IGHV3-19-201ENST00000521488 291 ntBASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ZNF540Q8NDQ6 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 AP000974.1-201ENST00000623909 2387 ntBASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 AC034268.1-201ENST00000441047 882 ntBASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 SLC47A1P1-202ENST00000449666 945 ntBASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 AL162430.1-201ENST00000480705 870 ntBASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.7■□□□□ 0.58
ZNF540Q8NDQ6 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 YBX1P1-201ENST00000445822 960 ntBASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms