Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC27.36■■□□□ 1.97
USP54Q70EL1 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC27.36■■□□□ 1.97
USP54Q70EL1 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC27.36■■□□□ 1.97
USP54Q70EL1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
USP54Q70EL1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.36■■□□□ 1.97
USP54Q70EL1 Z98882.1-201ENST00000622160 2253 ntBASIC27.35■■□□□ 1.97
USP54Q70EL1 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC27.35■■□□□ 1.97
USP54Q70EL1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC27.35■■□□□ 1.97
USP54Q70EL1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
USP54Q70EL1 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 AC087499.1-201ENST00000418141 1075 ntBASIC27.35■■□□□ 1.97
USP54Q70EL1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC27.35■■□□□ 1.97
USP54Q70EL1 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
USP54Q70EL1 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC27.34■■□□□ 1.97
USP54Q70EL1 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC27.34■■□□□ 1.97
USP54Q70EL1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP54Q70EL1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
USP54Q70EL1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC27.34■■□□□ 1.97
USP54Q70EL1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC27.34■■□□□ 1.97
USP54Q70EL1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC27.34■■□□□ 1.97
USP54Q70EL1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC27.34■■□□□ 1.97
USP54Q70EL1 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
USP54Q70EL1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP54Q70EL1 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
USP54Q70EL1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
USP54Q70EL1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC27.33■■□□□ 1.97
USP54Q70EL1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC27.33■■□□□ 1.97
USP54Q70EL1 AL353708.3-201ENST00000610272 989 ntBASIC27.33■■□□□ 1.97
USP54Q70EL1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC27.33■■□□□ 1.97
USP54Q70EL1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC27.33■■□□□ 1.97
USP54Q70EL1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC27.33■■□□□ 1.97
USP54Q70EL1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
USP54Q70EL1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC27.33■■□□□ 1.97
USP54Q70EL1 KRT16P5-201ENST00000455284 522 ntBASIC27.33■■□□□ 1.97
USP54Q70EL1 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC27.33■■□□□ 1.97
USP54Q70EL1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
USP54Q70EL1 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC27.33■■□□□ 1.97
USP54Q70EL1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP54Q70EL1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC27.32■■□□□ 1.96
USP54Q70EL1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC27.32■■□□□ 1.96
USP54Q70EL1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
USP54Q70EL1 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC27.32■■□□□ 1.96
USP54Q70EL1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
USP54Q70EL1 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC27.32■■□□□ 1.96
USP54Q70EL1 PRKY-204ENST00000533551 1019 ntBASIC27.32■■□□□ 1.96
USP54Q70EL1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC27.32■■□□□ 1.96
USP54Q70EL1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC27.32■■□□□ 1.96
USP54Q70EL1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
USP54Q70EL1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC27.31■■□□□ 1.96
USP54Q70EL1 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC27.31■■□□□ 1.96
USP54Q70EL1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC27.31■■□□□ 1.96
USP54Q70EL1 NUDT16P1-203ENST00000513809 620 ntBASIC27.31■■□□□ 1.96
USP54Q70EL1 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC27.31■■□□□ 1.96
USP54Q70EL1 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP54Q70EL1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC27.31■■□□□ 1.96
USP54Q70EL1 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC27.31■■□□□ 1.96
USP54Q70EL1 AL353807.1-201ENST00000427475 662 ntBASIC27.3■■□□□ 1.96
USP54Q70EL1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC27.3■■□□□ 1.96
USP54Q70EL1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
USP54Q70EL1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
USP54Q70EL1 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC27.3■■□□□ 1.96
USP54Q70EL1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC27.3■■□□□ 1.96
USP54Q70EL1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC27.3■■□□□ 1.96
USP54Q70EL1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC27.3■■□□□ 1.96
USP54Q70EL1 AP001412.1-201ENST00000608405 714 ntBASIC27.3■■□□□ 1.96
USP54Q70EL1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
USP54Q70EL1 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
USP54Q70EL1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC27.29■■□□□ 1.96
USP54Q70EL1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC27.29■■□□□ 1.96
USP54Q70EL1 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC27.29■■□□□ 1.96
USP54Q70EL1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC27.29■■□□□ 1.96
USP54Q70EL1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
USP54Q70EL1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms