Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 FAM99A-202ENST00000538190 1989 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 AL355355.2-201ENST00000442321 338 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 AC124283.5-201ENST00000624661 1809 ntBASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CSPG4Q6UVK1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 AC073508.3-201ENST00000619697 1419 ntBASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CSPG4Q6UVK1 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 AC127496.7-201ENST00000625110 1798 ntBASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 UPK3BP1-201ENST00000428678 509 ntBASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CSPG4Q6UVK1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 CYP21A1P-202ENST00000354927 1481 ntBASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CSPG4Q6UVK1 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CSPG4Q6UVK1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms